Protein ZmLIM13
ZmLIM13 is a protein in the LIM family.
Information
TF Name: ZmLIM13
Species: Maize
TF Family: LIM
Gene Name(Synonym): LIMTF13
Uniprot ID: K7VF85
Subgenome: 2

Protein ZmLIM13

ZmLIM13 is a protein in the LIM family.

Overview of domains present in v5 transcripts
PF00412PF12315
Zm00001eb397900_T001
Zm00001eb397900_T002

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d047837DAPseq no logo sequence fimo position
Zm00001d047837DAPseq no logo sequence fimo position
Zm00001d047837ChIPseq no logo sequence fimo position
Zm00001d047837PChIPseq no logo sequence fimo position

Interactions where ZmLIM13 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmLIM13 is the target  
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There are 65 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb397900_T001 from maize genome v5

Amino Acid Sequence
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MLTQAISYGVVSMCLLILSSAERRSGFMKWLCNFLKGPKPGEPNRRRPQVTAGEEEDALWHQRPVRPKNDPPRNDNEEVD
RAIAESLTEDVRTPKEKTRKGDKDDEDLARAIQDSLNMNPYTPYNPYAPSHAQPRGHRLCAGCKHEIGHGHYLSCMGIYW
HPQCFRCNSCGHPIRETEFTLLSTDPYHKLCYKELHHPKCDVCLQFIPTNRSGLIEYRAHPFWGQKYCPSHEHDRTPRCC
SCEKMEPRNTKYMSLGDGRSLCMECLGSAVMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESRGPH
HMPETRGLCLSEEQTVSSILRRPRIGGNRLLDMRTQPQKLTRRCEVTAILVLYGLPRLLTGSILAHELMHGWLRLKGYRN
LNAEVEEGICQVMSYLWLESEILPSSSRHAQPSSSYASSSSSSYSYPPTSSKKGGISHTEKKLGEFFMHQIAHDTSTAYG
DGFRTAYAAVNKYGLRQTLNHIRLTGGLPV

MLTQAISYGVVSMCLLILSSAERRSGFMKWLCNFLKGPKPGEPNRRRPQVTAGEEEDALWHQRPVRPKNDPPRNDNEEVD
RAIAESLTEDVRTPKEKTRKGDKDDEDLARAIQDSLNMNPYTPYNPYAPSHAQPRGHRLCAGCKHEIGHGHYLSCMGIYW
HPQCFRCNSCGHPIRETEFTLLSTDPYHKLCYKELHHPKCDVCLQFIPTNRSGLIEYRAHPFWGQKYCPSHEHDRTPRCC
SCEKMEPRNTKYMSLGDGRSLCMECLGSAVMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESRGPH
HMPETRGLCLSEEQTVSSILRRPRIGGNRLLDMRTQPQKLTRRCEVTAILVLYGLPRLLTGSILAHELMHGWLRLKGYRN
LNAEVEEGICQVMSYLWLESEILPSSSRHAQPSSSYASSSSSSYSYPPTSSKKGGISHTEKKLGEFFMHQIAHDTSTAYG
DGFRTAYAAVNKYGLRQTLNHIRLTGGLPV

MLTQAISYGVVSMCLLILSSAERRSGFMKWLCNFLKGPKPGEPNRRRPQVTAGEEEDALWHQRPVRPKNDPPRNDNEEVD
RAIAESLTEDVRTPKEKTRKGDKDDEDLARAIQDSLNMNPYTPYNPYAPSHAQPRGHRLCAGCKHEIGHGHYLSCMGIYW
HPQCFRCNSCGHPIRETEFTLLSTDPYHKLCYKELHHPKCDVCLQFIPTNRSGLIEYRAHPFWGQKYCPSHEHDRTPRCC
SCEKMEPRNTKYMSLGDGRSLCMECLGSAVMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESRGPH
HMPETRGLCLSEEQTVSSILRRPRIGGNRLLDMRTQPQKLTRRCEVTAILVLYGLPRLLTGSILAHELMHGWLRLKGYRN
LNAEVEEGICQVMSYLWLESEILPSSSRHAQPSSSYASSSSSSYSYPPTSSKKGGISHTEKKLGEFFMHQIAHDTSTAYG
DGFRTAYAAVNKYGLRQTLNHIRLTGGLPV

MLTQAISYGVVSMCLLILSSAERRSGFMKWLCNFLKGPKPGEPNRRRPQVTAGEEEDALWHQRPVRPKNDPPRNDNEEVD
RAIAESLTEDVRTPKEKTRKGDKDDEDLARAIQDSLNMNPYTPYNPYAPSHAQPRGHRLCAGCKHEIGHGHYLSCMGIYW
HPQCFRCNSCGHPIRETEFTLLSTDPYHKLCYKELHHPKCDVCLQFIPTNRSGLIEYRAHPFWGQKYCPSHEHDRTPRCC
SCEKMEPRNTKYMSLGDGRSLCMECLGSAVMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESRGPH
HMPETRGLCLSEEQTVSSILRRPRIGGNRLLDMRTQPQKLTRRCEVTAILVLYGLPRLLTGSILAHELMHGWLRLKGYRN
LNAEVEEGICQVMSYLWLESEILPSSSRHAQPSSSYASSSSSSYSYPPTSSKKGGISHTEKKLGEFFMHQIAHDTSTAYG
DGFRTAYAAVNKYGLRQTLNHIRLTGGLPV

MLTQAISYGVVSMCLLILSSAERRSGFMKWLCNFLKGPKPGEPNRRRPQVTAGEEEDALWHQRPVRPKNDPPRNDNEEVD
RAIAESLTEDVRTPKEKTRKGDKDDEDLARAIQDSLNMNPYTPYNPYAPSHAQPRGHRLCAGCKHEIGHGHYLSCMGIYW
HPQCFRCNSCGHPIRETEFTLLSTDPYHKLCYKELHHPKCDVCLQFIPTNRSGLIEYRAHPFWGQKYCPSHEHDRTPRCC
SCEKMEPRNTKYMSLGDGRSLCMECLGSAVMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESRGPH
HMPETRGLCLSEEQTVSSILRRPRIGGNRLLDMRTQPQKLTRRCEVTAILVLYGLPRLLTGSILAHELMHGWLRLKGYRN
LNAEVEEGICQVMSYLWLESEILPSSSRHAQPSSSYASSSSSSYSYPPTSSKKGGISHTEKKLGEFFMHQIAHDTSTAYG
DGFRTAYAAVNKYGLRQTLNHIRLTGGLPV

MLTQAISYGVVSMCLLILSSAERRSGFMKWLCNFLKGPKPGEPNRRRPQVTAGEEEDALWHQRPVRPKNDPPRNDNEEVD
RAIAESLTEDVRTPKEKTRKGDKDDEDLARAIQDSLNMNPYTPYNPYAPSHAQPRGHRLCAGCKHEIGHGHYLSCMGIYW
HPQCFRCNSCGHPIRETEFTLLSTDPYHKLCYKELHHPKCDVCLQFIPTNRSGLIEYRAHPFWGQKYCPSHEHDRTPRCC
SCEKMEPRNTKYMSLGDGRSLCMECLGSAVMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESRGPH
HMPETRGLCLSEEQTVSSILRRPRIGGNRLLDMRTQPQKLTRRCEVTAILVLYGLPRLLTGSILAHELMHGWLRLKGYRN
LNAEVEEGICQVMSYLWLESEILPSSSRHAQPSSSYASSSSSSYSYPPTSSKKGGISHTEKKLGEFFMHQIAHDTSTAYG
DGFRTAYAAVNKYGLRQTLNHIRLTGGLPV

MLTQAISYGVVSMCLLILSSAERRSGFMKWLCNFLKGPKPGEPNRRRPQVTAGEEEDALWHQRPVRPKNDPPRNDNEEVD
RAIAESLTEDVRTPKEKTRKGDKDDEDLARAIQDSLNMNPYTPYNPYAPSHAQPRGHRLCAGCKHEIGHGHYLSCMGIYW
HPQCFRCNSCGHPIRETEFTLLSTDPYHKLCYKELHHPKCDVCLQFIPTNRSGLIEYRAHPFWGQKYCPSHEHDRTPRCC
SCEKMEPRNTKYMSLGDGRSLCMECLGSAVMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESRGPH
HMPETRGLCLSEEQTVSSILRRPRIGGNRLLDMRTQPQKLTRRCEVTAILVLYGLPRLLTGSILAHELMHGWLRLKGYRN
LNAEVEEGICQVMSYLWLESEILPSSSRHAQPSSSYASSSSSSYSYPPTSSKKGGISHTEKKLGEFFMHQIAHDTSTAYG
DGFRTAYAAVNKYGLRQTLNHIRLTGGLPV

MLTQAISYGVVSMCLLILSSAERRSGFMKWLCNFLKGPKPGEPNRRRPQVTAGEEEDALWHQRPVRPKNDPPRNDNEEVD
RAIAESLTEDVRTPKEKTRKGDKDDEDLARAIQDSLNMNPYTPYNPYAPSHAQPRGHRLCAGCKHEIGHGHYLSCMGIYW
HPQCFRCNSCGHPIRETEFTLLSTDPYHKLCYKELHHPKCDVCLQFIPTNRSGLIEYRAHPFWGQKYCPSHEHDRTPRCC
SCEKMEPRNTKYMSLGDGRSLCMECLGSAVMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESRGPH
HMPETRGLCLSEEQTVSSILRRPRIGGNRLLDMRTQPQKLTRRCEVTAILVLYGLPRLLTGSILAHELMHGWLRLKGYRN
LNAEVEEGICQVMSYLWLESEILPSSSRHAQPSSSYASSSSSSYSYPPTSSKKGGISHTEKKLGEFFMHQIAHDTSTAYG
DGFRTAYAAVNKYGLRQTLNHIRLTGGLPV

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF00412
PF00412
PF00412
PF12315
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Nucleotide Sequence
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GTTTCCCGCCGCAGGGCATAAAAAA...

GRMZM2G151934_T01 from maize genome v3

Amino Acid Sequence
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MLTQAISYGVVSMCLLILSSAERRSGFMKWLCNFLKGPKPGEPNRRRPQVTAGEEEDALWHQRPVRPKNDPPRNDNEEVD
RAIAESLTEDVRTPKEKTRKGDKDDEDLARAIQDSLNMNPYTPYNPYAPSHAQPRGHRLCAGCKHEIGHGHYLSCMGIYW
HPQCFRCNSCGHPIRETEFTLLSTDPYHKLCYKELHHPKCDVCLQFIPTNRSGLIEYRAHPFWGQKYCPSHEHDRTPRCC
SCEKMEPRNTKYMSLGDGRSLCMECLGSAVMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESRGPH
HMPETRGLCLSEEQTVSSILRRPRIGGNRLLDMRTQPQKLTRRCEVTAILVLYGLPRLLTGSILAHELMHGWLRLKGYRN
LNAEVEEGICQVMSYLWLESEILPSSSRHAQPSSSYASSSSSSYSYPPTSSKKGGISHTEKKLGEFFMHQIAHDTSTAYG
DGFRTAYAAVNKYGLRQTLNHIRLTGGLAV

Nucleotide Sequence
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TTTTGCTATAACGAAAGATGGCCGG...

GRMZM2G151934_T02 from maize genome v3


Related TFome: pUT6445

Amino Acid Sequence
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MAYSSRTCGRCNNHERRSGFMKWLCNFLKGPKPGEPNRRRPQVTAGEEEDALWHQRPVRPKNDPPRNDNEEVDRAIAESL
TEDVRTPKEKTRKGDKDDEDLARAIQDSLNMNPYTPYNPYAPSHAQPRGHRLCAGCKHEIGHGHYLSCMGIYWHPQCFRC
NSCGHPIRETEFTLLSTDPYHKLCYKELHHPKCDVCLQFIPTNRSGLIEYRAHPFWGQKYCPSHEHDRTPRCCSCEKMEP
RNTKYMSLGDGRSLCMECLGSAVMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESRGPHHMPETRG
LCLSEEQTVSSILRRPRIGGNRLLDMRTQPQKLTRRCEVTAILVLYGLPRLLTGSILAHELMHGWLRLKGYRNLNAEVEE
GICQVMSYLWLESEILPSSSRHAQPSSSYASSSSSSYSYPPTSSKKGGISHTEKKLGEFFMHQIAHDTSTAYGDGFRTAY
AAVNKYGLRQTLNHIRLTGGLAV

Nucleotide Sequence
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TTTTGCTATAACGAAAGATGGCCGG...

Zm00001d047837_T001 from maize genome v4

Amino Acid Sequence
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MAYSSRTCGRCNNHERRSGFMKWLCNFLKGPKPGEPNRRRPQVTAGEEEDALWHQRPVRPKNDPPRNDNEEVDRAIAESL
TEDVRTPKEKTRKGDKDDEDLARAIQDSLNMNPYTPYNPYAPSHAQPRGHRLCAGCKHEIGHGHYLSCMGIYWHPQCFRC
NSCGHPIRETEFTLLSTDPYHKLCYKELHHPKCDVCLQFIPTNRSGLIEYRAHPFWGQKYCPSHEHDRTPRCCSCEKMEP
RNTKYMSLGDGRSLCMECLGSAVMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESRGPHHMPETRG
LCLSEEQTVSSILRRPRIGGNRLLDMRTQPQKLTRRCEVTAILVLYGLPRLLTGSILAHELMHGWLRLKGYRNLNAEVEE
GICQVMSYLWLESEILPSSSRHAQPSSSYASSSSSSYSYPPTSSKKGGISHTEKKLGEFFMHQIAHDTSTAYGDGFRTAY
AAVNKYGLRQTLNHIRLTGGLPV

Nucleotide Sequence
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ATCTCCTCCTCCGTCCATCGTGCAG...

Zm00001d047837_T002 from maize genome v4

Amino Acid Sequence
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MAYSSRTCGRCNNHERRSGFMKWLCNFLKGPKPGEPNRRRPQVTAGEEEDALWHQRPVRPKNDPPRNDNEEVDRAIAESL
TEDVRTPKEKTRKGDKDDEDLARAIQDSLNMNPYTPYNPYAPSHAQPRGHRLCAGCKHEIGHGHYLSCMGIYWHPQCFRC
NSCGHPIRETEACKLLPLPPFQVTVLVSEMIPTNRSGLIEYRAHPFWGQKYCPSHEHDRTPRCCSCEKMEPRNTKYMSLG
DGRSLCMECLGSAVMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESRGPHHMPETRGLCLSEEQTV
SSILRRPRIGGNRLLDMRTQPQKLTRRCEVTAILVLYGLPRLLTGSILAHELMHGWLRLKGYRNLNAEVEEGICQVMSYL
WLESEILPSSSRHAQPSSSYASSSSSSYSYPPTSSKKGGISHTEKKLGEFFMHQIAHDTSTAYGDGFRTAYAAVNKYGLR
QTLNHIRLTGGLPV

Nucleotide Sequence
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ATCTCCTCCTCCGTCCATCGTGCAG...

Zm00001d047837_T003 from maize genome v4

Amino Acid Sequence
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MAYSSRTCGRCNNHERRSGFMKWLCNFLKGPKPGEPNRRRPQVTAGEEEDALWHQRPVRPKNDPPRNDNEEVDRAIAESL
TEDVRTPKEKTRKGDKDDEDLARAIQDSLNMNPYTPYNPYAPSHAQPRGHRLCAGCKHEIGHGHYLSCMGIYWHPQCFRC
NSCGHPIRETEACKLLPLPPFQVTVLVSEMVIPVLVSSCSPVHIAEYRSIPQAVLQGAAPSEMRRLPSVYSNEQEWPDRV
QSPPVLGPEPRNTKYMSLGDGRSLCMECLGSAVMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESR
GPHHMPETRGLCLSEEQTVSSILRRPRIGGNRLLDMRTQPQKLTRRCEVTAILVLYGLPRLLTGSILAHELMHGWLRLKG
YRNLNAEVEEGICQVMSYLWLESEILPSSSRHAQPSSSYASSSSSSYSYPPTSSKKGGISHTEKKLGEFFMHQIAHDTST
AYGDGFRTAYAAVNKYGLRQTLNHIRLTGGLPV

Nucleotide Sequence
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ATCTCCTCCTCCGTCCATCGTGCAG...

Zm00001eb397900_T002 from maize genome v5

Amino Acid Sequence
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MAYSSRTCGRCNNHERRSGFMKWLCNFLKGPKPGEPNRRRPQVTAGEEEDALWHQRPVRPKNDPPRNDNEEVDRAIAESL
TEDVRTPKEKTRKGDKDDEDLARAIQDSLNMNPYTPYNPYAPSHAQPRGHRLCAGCKHEIGHGHYLSCMGIYWHPQCFRC
NSCGHPIRETEFTLLSTDPYHKLCYKELHHPKCDVCLQFIPTNRSGLIEYRAHPFWGQKYCPSHEHDRTPRCCSCEKMEP
RNTKYMSLGDGRSLCMECLGSAVMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESRGPHHMPETRG
LCLSEEQTVSSILRRPRIGGNRLLDMRTQPQKLTRRCEVTAILVLYGLPRLLTGSILAHELMHGWLRLKGYRNLNAEVEE
GICQVMSYLWLESEILPSSSRHAQPSSSYASSSSSSYSYPPTSSKKGGISHTEKKLGEFFMHQIAHDTSTAYGDGFRTAY
AAVNKYGLRQTLNHIRLTGGLPV

Nucleotide Sequence
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CTCCGTCCATCGTGCAGATCTTGCT...


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